Board Thread:Theories and Speculation/@comment-25139119-20150807165411/@comment-1512913-20150809132657

It was made clear he ran out of chakra against Sasuke. When Hagoromo made Naruto the "meeting ground" he probably didn't expect the two would fight 24/7 and blow each others arms off. Also even if any little chakra might have remained, it's definitely gone past Toneri encounter. But I don't think he has lost all of his Hagoromo buffs, he still has "something" hence no pigment around eyes, but then again, he was also shown in standard Sage Mode with pigmentation too, so shrugs... but Jesus healing powers, flight, TSB and chakras of the other beasts are definitely gone.