Sage Mode

Sage Mode is the result of using natural energy along with a ninja's normal chakra in perfect balance to drastically empower a ninja's abilities.

Advantages

 * The user's physical strength, speed, stamina, and durability dramatically increase.
 * The user's ninjutsu, genjutsu, and taijutsu become more powerful.
 * The user can harness the natural energy surrounding them, turning it into an extension of their body, and increasing the reach of their attacks.
 * The user gains the ability to sense chakra around them.

Weaknesses

 * If the user draws in too much natural energy in the attempt to initiate Sage Mode, they run the risk of transforming into a toad, then into stone.
 * In order to gather enough natural energy to initiate the transformation into Sage Mode, the user must remain perfectly still. Because of that, the user can be an easy target for an opponent.
 * Because the user needs to move during combat, the Sage chakra cannot be replenished, which means the user can't stay within this state for extended periods of time.
 * The two weaknesses mentioned above can be bypassed through the Sage Art: Amphibian Technique, where one Sage gathers chakra for another or as in Naruto's case, shadow clones can be used for the same purpose.
 * After Sage Mode has ended, the user appears to experience exhaustion.

Imperfect Sage Mode
Jiraiya was not able to properly balance his own chakra with natural energy, resulting in him using an imperfect form of Sage Mode. As such, whenever Jiraiya was using Sage Mode, he would summon Shima and Fukasaku by drawing a blood contract on his face to assist him in using Sage Mode. The Toad Elders fused to Jiraiya's shoulders with Sage Art: Amphibian Technique, gathering natural energy from their stationary positions for Jiraiya's use.

As a result of the imbalance (and the imperfect nature of his transformation), Jiraiya took a number of toad-like traits when using Sage Mode. His appearance was altered: his nose grows bigger and gains warts, he gains excess hair (his goatee), and toad-like eyes. Further transformational attributes includes him taking on a toad-like stature and the lines on his face become much thicker, taking over each side of his face. Because of these traits, Jiraiya didn't like to use Sage Mode as it "displeases the ladies". He also showed the ability to transform his limbs (e.g. his hands and feet) into those of frogs so as to aid in maneuverability.

Perfect Sage Mode
Unlike Jiraiya, Naruto is able to perfectly balance the natural energy with his own chakra. This allows him to use the true Sage Mode, which retains all of his normal physical characteristics except for toad-like eyes: yellow irises, horizontal bar-like pupils, and the redish-orange pigment mark of a true sage on each eye. A true sage would still suffer from the weaknesses of Sage Mode, requiring that they use Sage Art: Amphibian Technique in a battle situation. Because of the Nine-Tailed Demon Fox sealed within Naruto, however, Fukasaku was rejected whenever he tried to fuse with him.

As a workaround, Naruto has some of his shadow clones gather natural energy elsewhere while he fights. Once he has run out of his own senjutsu chakra, he has one of the clones disperse, giving him the clone's natural energy and allowing him to enter Sage Mode again. This method limits the maximum number of shadow clones that Naruto can create to five for as long as the clones are gathering natural energy, as anything more would interfere with their focus. To make sure he has enough shadow clones for use in battle, Naruto has only two shadow clones gather senjutsu chakra, allowing him to enter Sage Mode a total of three times. Naruto also stated that it is possible to lengthen the time he is in Sage Mode.

Nine-Tails Influence
During his meeting with Nagato, Naruto was stabbed in the gut with the former's chakra disruption blade. Nagato thought that he would be able to control Naruto with his own chakra, but Naruto revealed a fusion of his initial jinchūriki form and Sage Mode characteristics. The exact capabilities of this form are unknown, but it was enough to completely resist Nagato's control.