Board Thread:Naruto Discussions/@comment-25464204-20140925215818/@comment-1512913-20140929121016

That's really not an unresolved mystery or plothole, that falls under "technique physics" and only Kishi can answer that.

My contribution:
 * Was the man controlling Yagura truly Obito? If so and Obito could control even a perfect jinchuuriki, why didn't he do so with Naruto or Killer B?
 * How come was Shisui's Mangekyou on "cooldown" during the time Itachi battled Sasuke? On whom did Shisui use Kotoamatsukami in the past, hm? ;)
 * How did the Shinju incarnate into Kaguya?
 * Did Kaguya have chakra prior to consumption of the fruit? If not, then was her Byakugan also a result of it?
 * How come did Hagoromo become a jinchuuriki, even though he and his brother were shown sealing up the Ten-Tails into the moon as young men, contradiction Obito and Kurama's narration of the events?

There's plenty more I can't recall on the spot.