Board Thread:Versus Debates/@comment-26107879-20151026005748/@comment-3965545-20151101173303

Nagato mastered his Rinnegan whether it was original or not. He was even given the 3rd Sage of Six Paths title and unlike Obito he could have both Rinnegan before he even became a Shinobi. Zetsu and Madara also called him the perfect host for the Rinnegan. It's safe to say Nagato's usage wouldn't be much less than a true owners usage. So therefor visual Genjutsu does not affect Rinnegan.